edu.washington.biostr.sig.brainj3d.volume
Class AbstractVolumeView<T extends Data>

java.lang.Object
  edu.washington.biostr.sig.brainj3d.data.DefaultDataView<T>
      edu.washington.biostr.sig.brainj3d.volume.AbstractVolumeView<T>

All Implemented Interfaces:

DataView, View3D, VolumeView

Direct Known Subclasses:

MapVolumeView

public abstract class AbstractVolumeView<T extends Data>
extends DefaultDataView<T>
implements VolumeView

Field Summary

Fields inherited from interface edu.washington.biostr.sig.brainj3d.volume.VolumeView

CORONAL, SAGITTAL, TRANSVERSE, XY_PLANE, XZ_PLANE, YZ_PLANE

Constructor Summary

AbstractVolumeView()

AbstractVolumeView(Class<? extends Data> type)

Method Summary

javax.vecmath.Point3f	fromPercent(javax.vecmath.Point3f p) Convert p from percentage space to physical space.
javax.vecmath.Vector3f	getDown(int slice)
double	getIntensity(float x, float y, float z, int time)
double[]	getLine(javax.vecmath.Point3f p1, javax.vecmath.Point3f p2, int time, double[] line)
ColorLookupTable	getLookupTable()
javax.vecmath.Vector3f	getRight(int slice)
double	getScaledIntensity(float x, float y, float z, int time)
BufferedImage	getSliceImage(int slice, javax.vecmath.Point3f point, boolean alpha, int timepoint)
String	getSpace()
javax.media.j3d.Transform3D	getSpaceTransform()
int	getTime()
javax.vecmath.Tuple3f[]	getTuplesForImage(int slice, javax.vecmath.Point3f point)
javax.vecmath.Point3f	getUL(int slice, javax.vecmath.Point3f percent)
String	getUnit()
Object	getValue(float x, float y, float z, int time)
void	setLookupTable(ColorLookupTable table)
protected void	setMax(float x, float y, float z)
protected void	setMin(float x, float y, float z)
void	setSpaceTransform(String newSpace, javax.media.j3d.Transform3D trans)
void	setTime(int time)
void	setUnit(String newUnit)
protected void	setXDir(float x, float y, float z)
protected void	setYDir(float x, float y, float z)
protected void	setZDir(float x, float y, float z)
javax.vecmath.Point3f	toPercent(javax.vecmath.Point3f p) Convert p from physical space to a percentage space based on this image.

Methods inherited from class edu.washington.biostr.sig.brainj3d.data.DefaultDataView

addedToModel, equals, getCastData, getData, getDataKey, getInterval, getKey, getMaxTime, getMinTime, getParameter, getParameters, getTarget, hashCode, hasTime, removedFromModel, setData, setDefaultParameters, setParameter, setParameter, setParameter, setParameters, setTarget, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface edu.washington.biostr.sig.brainj3d.volume.VolumeView

getImage, getIntensity, getScaledIntensity, getValue

Methods inherited from interface edu.washington.biostr.sig.brainj3d.data.DataView

addedToModel, getController, getData, getDataKey, getInterval, getKey, getMaxTime, getMinTime, getParameters, getTarget, getViewName, hasTime, removedFromModel, setData, setDefaultParameters, setParameter, setParameters, setTarget

Constructor Detail

AbstractVolumeView

public AbstractVolumeView()

AbstractVolumeView

public AbstractVolumeView(Class<? extends Data> type)

Method Detail

setMin

protected void setMin(float x,
                      float y,
                      float z)

setMax

protected void setMax(float x,
                      float y,
                      float z)

setXDir

protected void setXDir(float x,
                       float y,
                       float z)

setYDir

protected void setYDir(float x,
                       float y,
                       float z)

setZDir

protected void setZDir(float x,
                       float y,
                       float z)

getLookupTable

public ColorLookupTable getLookupTable()

Specified by:

getLookupTable in interface VolumeView

setLookupTable

public void setLookupTable(ColorLookupTable table)

Specified by:

setLookupTable in interface VolumeView

getSliceImage

public BufferedImage getSliceImage(int slice,
                                   javax.vecmath.Point3f point,
                                   boolean alpha,
                                   int timepoint)

Specified by:

getSliceImage in interface VolumeView

getTuplesForImage

public javax.vecmath.Tuple3f[] getTuplesForImage(int slice,
                                                 javax.vecmath.Point3f point)

Specified by:

getTuplesForImage in interface VolumeView

getLine

public double[] getLine(javax.vecmath.Point3f p1,
                        javax.vecmath.Point3f p2,
                        int time,
                        double[] line)

Specified by:

getLine in interface VolumeView

getIntensity

public double getIntensity(float x,
                           float y,
                           float z,
                           int time)

Specified by:

getIntensity in interface VolumeView

getScaledIntensity

public double getScaledIntensity(float x,
                                 float y,
                                 float z,
                                 int time)

Specified by:

getScaledIntensity in interface VolumeView

getValue

public Object getValue(float x,
                       float y,
                       float z,
                       int time)

Specified by:

getValue in interface VolumeView

setTime

public void setTime(int time)

getTime

public int getTime()

toPercent

public javax.vecmath.Point3f toPercent(javax.vecmath.Point3f p)

Description copied from interface: VolumeView

Convert p from physical space to a percentage space based on this image.

Specified by:

toPercent in interface VolumeView

Returns:

p

fromPercent

public javax.vecmath.Point3f fromPercent(javax.vecmath.Point3f p)

Description copied from interface: VolumeView

Convert p from percentage space to physical space.

Specified by:

fromPercent in interface VolumeView

Returns:

setUnit

public void setUnit(String newUnit)

Specified by:

setUnit in interface View3D

getUnit

public String getUnit()

Specified by:

getUnit in interface View3D

getSpace

public String getSpace()

Specified by:

getSpace in interface View3D

setSpaceTransform

public void setSpaceTransform(String newSpace,
                              javax.media.j3d.Transform3D trans)

Specified by:

setSpaceTransform in interface View3D

getSpaceTransform

public javax.media.j3d.Transform3D getSpaceTransform()

Specified by:

getSpaceTransform in interface View3D

getDown

public javax.vecmath.Vector3f getDown(int slice)

getRight

public javax.vecmath.Vector3f getRight(int slice)

getUL

public javax.vecmath.Point3f getUL(int slice,
                                   javax.vecmath.Point3f percent)