edu.washington.biostr.sig.volume
Class BitIndexedVolumeArray

java.lang.Object
  edu.washington.biostr.sig.volume.VolumeArray
      edu.washington.biostr.sig.volume.IndexedVolumeArray
          edu.washington.biostr.sig.volume.BitIndexedVolumeArray

All Implemented Interfaces:

Serializable, Iterable<Object>

public class BitIndexedVolumeArray
extends IndexedVolumeArray

Support a bit (true/false) based volume array.
The underlying structure is currently a BitSet.
See the documentation for VolumeArray for more data.

Version:

1.0

Author:

Eider Moore

See Also:

Serialized Form

Field Summary

Fields inherited from class edu.washington.biostr.sig.volume.VolumeArray

EPSILON, imageMax, imageMin, maxI5, maxTime, maxX, maxY, maxZ, MINUS, NONE, PLUS, X, X_MINUS, X_PLUS, Y, Y_MINUS, Y_PLUS, Z, Z_MINUS, Z_PLUS

Constructor Summary

BitIndexedVolumeArray(int maxX, int maxY, int maxZ, int maxTime, int maxI5, javax.vecmath.Matrix4d index2space, BitSet set)

Method Summary

double	getDouble(int index) get the double value from this index.
int	getInt(int index) get the int value from this index.
DataType	getNaturalType() The natural type is either float or int and is determined based on whether the backing array is an integer or a floating point.
DataType	getType() Returns a type appropriate for saving.
void	setData(int index, double value)
void	setData(int index, int value)

Methods inherited from class edu.washington.biostr.sig.volume.IndexedVolumeArray

getDouble, getIndex, getInt, getSeries, getSeries, interpolate, iterator, iterator, lineNatural, map, setData, setData, setSeries, setSeries

Methods inherited from class edu.washington.biostr.sig.volume.VolumeArray

get, getBestDouble, getBestDouble, getBestIndex, getDouble, getDouble, getFloatAnd, getImage, getImage, getImage, getImage, getImageMax, getImageMin, getIndex2Space, getInt, getInt, getLine, getLine, getMaxI5, getMaxTime, getMaxX, getMaxY, getMaxZ, getMmPerX, getMmPerY, getMmPerZ, getNumEntries, getSpace2Index, getValueMM, getValueVoxels, getValueVoxelsInt, quickRoundPositive, quickRoundPositive, randomSampling, renderInto, setMinMax, supportsLookupTable, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BitIndexedVolumeArray

public BitIndexedVolumeArray(int maxX,
                             int maxY,
                             int maxZ,
                             int maxTime,
                             int maxI5,
                             javax.vecmath.Matrix4d index2space,
                             BitSet set)

Parameters:

maxX - The maximum for the x dimension (fastest changing of the spacial indices)

maxY - The maximum for the y dimension.

maxZ - The maximum for the z dimension (slowest changing of the spacial indices).

maxTime - The maximum for the time dimension. Usually 1.

maxI5 - The maximum for the 5th dimension. Usually 1.

index2space - The transform, usually turns indices to mm coordinates. Must be invertable.

set - The data

Method Detail

getDouble

public double getDouble(int index)

Description copied from class: IndexedVolumeArray

get the double value from this index.

Specified by:

getDouble in class IndexedVolumeArray

Returns:

getInt

public int getInt(int index)

Description copied from class: IndexedVolumeArray

get the int value from this index.

Specified by:

getInt in class IndexedVolumeArray

Returns:

getNaturalType

public DataType getNaturalType()

Description copied from class: VolumeArray

The natural type is either float or int and is determined based on whether the backing array is an integer or a floating point.

Specified by:

getNaturalType in class VolumeArray

Returns:

The natural type (int, rgb or float)

getType

public DataType getType()

Description copied from class: VolumeArray

Returns a type appropriate for saving. Type can be TYPE_BYTE, TYPE_FLOAT, etc.

Specified by:

getType in class VolumeArray

Returns:

a type appropriate for saving.

setData

public void setData(int index,
                    double value)

Specified by:

setData in class IndexedVolumeArray

setData

public void setData(int index,
                    int value)

Specified by:

setData in class IndexedVolumeArray