Package edu.washington.biostr.sig.volume

Interface Summary

VolumeArrayIterator	The comments for individual functions are rather sparse, but this provides an overview that should be sufficient to tell you how to implement and use these functions. This is an 12-directional iterator that is returned by ImageData.iterator(). If we are at index x, y, z, t, i5.
VolumeFunction	VolumeFunctions can be mapped to a volume to convert every voxel by using the filter method.

Class Summary

AtlasCollection	Hold the AtlasElements in a collection that is used to organize and display the data.
AtlasElement	Encapsulate most of the information needed to specify an entry in an Atlas. The major information is a unique id, color, abbreviation, the key in the atlas and a full name.
BitIndexedVolumeArray	Support a bit (true/false) based volume array. The underlying structure is currently a BitSet. See the documentation for VolumeArray for more data.
ByteEncoder	Handle writing numbers in the specified endianness.
ImageExtractor	This class takes a matrix (extractor) that extracts an image by: Applying it to point (0,0,0) to find the center of the new image Applying it to Vector(width,0,0) to find the right vector Applying it to Vector(0,height,0) to find the down vector Extracting the image
ImageInfo	This attempts to provide a simple interface for getting a complete section out of an image at the specified location and viewing angle.
ImageInfo2	This attempts to provide a simple interface for getting a specified section out of an image at a given center, viewing angle, up direction and size. It also provides methods to conveniently rotate it and change various views.
IndexedAtlasVolumeArray	Encapsulate an atlas volume.
IndexedIterator	Provide an implementation of the multidimensional VolumeArrayIterator.
IndexedVolumeArray	This is a base class for image data as a single array.
Kernel3D	This class handles 3D kernel application to 3D data sets.
MirroredVolumeArray	Support mirroring a given IndexedVolumeArray around the x data.
RGBIndexedVolumeArray	Hold 3 channel RGB data in a volume.
UnsignedByteIndexedVolumeArray	Support an unsigned 8 bit integer based volume array. See the documentation for IndexedVolumeArray for more data.
VolumeArray	A VolumeArray contains the backing data for a 3D Volume Image.
VolumeArrayFactory	This will take in various arrays and convert them into VolumeDataBuffers.
VolumeUtil	Provide some static utility methods that are useful for VolumeArrays and similiar code.

Enum Summary

CardinalDirections	The main directions in an MRI.
DataType	these correspond to the datatype values in analyze 7.5 as much as possible
ImageInfo2.Direction
ImageInfo2.Orientation	Orientation specifies the desired convention to use.
Interpolation	An enum for choosing between supported Interpolation modes.